Function reference • vitessceR

Working with view configs

Functions and R6 classes for creating and manipulating Vitessce view config objects.

VitessceConfig$from_list: Create a new Vitessce Config from a list

VitessceConfig$from_object: Create a new Vitessce Config from a data object

VitessceConfig: VitessceConfig Class

VitessceConfigCoordinationScope: VitessceConfigCoordinationScope Class

VitessceConfigDataset: VitessceConfigDataset Class

VitessceConfigDatasetFile: VitessceConfigDatasetFile Class

VitessceConfigView: VitessceConfigView Class

hconcat(): Horizontally concatenate views

vconcat(): Vertically concatenate views

Constants for view configs

Lists which map keys to constant strings for use as parameters to the above view config functions.

DataType: Enumeration of Data Type values

FileType: Enumeration of File Type values

Component: Enumeration of Component values

CoordinationType: Enumeration of Coordination Type values

Widgets

Functions for creating Vitessce htmlwidgets.

vitessce_output() render_vitessce(): Shiny bindings for vitessceR

vitessce_widget(): Vitessce Widget

Dataset wrapper classes

Wrapper classes for automating the data conversion process for Vitessce.

AbstractWrapper: AbstractWrapper Class

AnnDataWrapper: AnnDataWrapper Class

CsvWrapper: CsvWrapper Class

MultiImageWrapper: MultiImageWrapper Class

OmeTiffWrapper: OmeTiffWrapper Class